miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|110398271|gb|EC964511.1|EC964511 TTTTTGATAGCTTAAATCTTAAAATTGTATATATAGAGTACAGCAACTGTATATGAAAGAGCTGAGTAAAATATAGCACA
CTGGCTTCCTGTCTAGAATGCATAGCATCATGAGCAATCACCCTTAGAAATTAGCAGAGTGACTGCTCATGATATTATCT
CATTCCATGAAAGCTTGAGCATGCTACACAGCCACACATGTACCGCGGATCAAAACCCTCCACCGAGAGCCGGAGACCAA
TAATCGGCTCCATTGTCACTTCCAACCTGCTGAGTGCACGAAACCGGAACCAGGCACAACCCTCTACTCTTCAAGTCCTT
TGGTGCATCTTGTGTATCCTGCTGATTAGGTGCTGATCCTTTTCTTTTGAGGCAGTTGTCGTTCAGGAGCTGACCAGGGT
CTTTGGGAAATATACAATTCATTTCGCCTTGAACACACTGTTGGTTCCTCATGTTTCCTGATGCATTGCCCAAGTACGGA
GAGCTAAGGGCCTCAATTTGACCCTGAAGGAATCTGATATACCCAATAGCTTCTAACAAGACAGAAGCAGTGTCAGTCTT
TCCAAATGGGGAAACTAACTGGTGAAGGGCTGTTATTCTATCACCCAGCTTCTCCTTTCTCACCTTTAGTGGTGGTTGGC
TCGGAGAGGGTTGAACCCTAGCCTTTTTACATGCCCCACCAGTCTCCGTGCTGTTACACTCAGTTGAATGATCTGCATGT
TGATTCCTAACACCAGCCTTGTTAGAGAAGTCTAATATGTTAGTGCTCAAGTTTGTAACGCACGACCTAGGAGAGGAAAC
TGGCATGATTTGGGACCAAGGAGGTCTTGATGTCTGAAAGCCTTCATCTCCATGATTATAGGGGTGGCTACTTTGAGAGA
CTACTTCTTGCTTTACATCAACTGCGGGAAT




Most similar to sp|Q8S3D1|BH068_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8S3D1|BH068_ARATH Transcription factor bHLH68 OS=Arabidopsis
           thaliana GN=BHLH68 PE=2 SV=2
          Length = 407

 Score =  246 bits (629), Expect = 1e-64
 Identities = 143/246 (58%), Positives = 173/246 (70%), Gaps = 18/246 (7%)
 Frame = -1

Query: 905 AVDVKQEVVSQSSHPYNHGDEGFQTSRPPWSQIMPVSSPRSCVTN-----LSTNILDFS- 744
           AVD+KQE     +   N+G      + PP    +  ++  S  +N      + N+LDFS 
Sbjct: 161 AVDIKQE----GNINNNNGYVISSPNSPPNKSCVTTTTTTSLNSNDDNINNNNNMLDFSS 216

Query: 743 NKAGV-----RNQHADHSTECNSTETGGAC-KKARVQPSPS-QPPLKVRKEKLGDRITAL 585
           N  G+     R+   D S+ECNS E GG+  KK R+QPSPS Q  LKVRKEKLG RI AL
Sbjct: 217 NHNGLHLSEGRHTPPDRSSECNSLEIGGSTNKKPRLQPSPSSQSTLKVRKEKLGGRIAAL 276

Query: 584 HQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLG-NASGNMRNQQCVQGEMNCIF 408
           HQLVSPFGKTDTASVL EAIGYIRFLQ QIEALS PY G  ASGNMR+QQ +QG+ +CIF
Sbjct: 277 HQLVSPFGKTDTASVLSEAIGYIRFLQSQIEALSHPYFGTTASGNMRHQQHLQGDRSCIF 336

Query: 407 PKDPGQLLNDNCLKRKGSAPNQQDTQDA----PKDLKSRGLCLVPVSCTQQVGSDNGADY 240
           P+DPGQL+ND C+KR+G++ +  D Q+A     KDL+SRGLCLVP+SCT QVGSDNGADY
Sbjct: 337 PEDPGQLVNDQCMKRRGASSSSTDNQNASEEPKKDLRSRGLCLVPISCTLQVGSDNGADY 396

Query: 239 WSPALG 222
           W+PALG
Sbjct: 397 WAPALG 402